Biomedical Imaging Center

Software

Research Productivity Analysis Software

A-index research productivity analysis web application (A-Index)

Optical Monte Carlo Simulation Software

Tetrahedron-based Inhomogeneous Monte-Carlo Optical Simulator (TIM-OS). Based on general volumetric mesh, this optical Monte Carlo simulator can deal with highly complex geometry efficiently.

OpenRecon — open-source software library for image reconstruction

OpenRecon provides easy-to-use MATLAB functions for forward projection and reconstruction of images in x-ray computed tomography (CT) and other applications. Internal codes are implemented in C++ for faster execution.  To find out more and to download OpenRecon, click here.

Monte Carlo eXtreme (MCX) — A GPU-accelerated photon transport simulator

Monte Carlo eXtreme, or MCX, is a Monte Carlo software for time-resolved photon transport simulations in 3D turbid media. It uses Graphics Processing Units (GPU) based massively parallel computing techniques and is extremely fast compared to traditional single-threaded CPU-based simulations. To find out more and to download MCX, click here.

Mesh-based Monte Carlo (MMC) — An accurate mesh-based 3D photon transport simulator

Mesh-based Monte Carlo, or MMC, is a Monte Carlo solver for photon migration in 3D turbid media. Different from existing MC software designed for layered or voxel-based media, MMC can represent a complex domain using a volumetric mesh. This not only greatly improves the accuracy of the solutions when modeling objects with curved/complex boundaries, but also gives an efficient way to sample the problem domain and uses less memory. To find out more and to download MMC, click here.