CBIS Facilities
Research Faculty at CBIS

Genomics - Other Services

  • Genomic: whole genome DNA-Seq and microbial metagenomics sequencing.
  • Transcriptomic: strand-specific RNA-Seq and small RNA-Seq.
  • Epigenomic: whole genome methyl-Seq and ChIP-Seq.
  • Bioinformatic: gene expression profiling, genome/transcriptome assembly and annotation, SNP/SV detection, population genetics studies and metagenomics analysis.
Rates & Fees: 

Valid through July 31, 2019

Library prep & QC

Service Unit RPI User ($) External Nonprofit ($) External Industry ($) External Ind Partner ($)
NGS library preparation Per sample 150 243 486 437
Real-time PCR QC Per sample 10 16 32 29
Gel electrophoresis QC Per gel 10 16 32 29
Personnel time Per hour 52 84 168 152
Training Per hour 62 100 201 181

Data Analysis

Category Service Unit RPI User ($) External Nonprofit ($) External Industry ($) External Ind Partner ($)
Data QC and alignment Barcode deconvolution, quality assessment and read clean-up Per sample 16 25 50 46
Reference genome mapping Per sample 26 42 84 76
RNA-Seq RNA-Seq batch analysis (≤20 samples) Per run 1,600 2,592 5,184 4,666
Gene expression profilling per sample Per sample 26 42 84 76
Differential expression analysis Per project 208 336 672 608
DNA-Seq Prokaryotic DNA-Seq batch analysis (≤20 samples) Per run 1,800 2,916 5,832 5,249
Eukaryotic DNA-Seq batch analysis (≤20 samples) Per run 2,300 3,726 7,452 6,707
Prokaryotic genomic variant calling Per sample 26 42 84 76
Eukaryotic genomic variant calling Per sample 52 84 168 152
GBS variant calling Per sample 26 42 84 76
Variant quality assessment and filtering Per project 416 672 1,344 1,216
Small RNA-Seq Small RNA-Seq batch analysis (≤20 samples) Per run 1,600 2,592 5,184 4,666
Small RNA-Seq peak calling Per sample 26 42 84 76
Small RNA profiling analysis Per project 208 336 672 608
Epigenetic: protein-DNA interaction ChIP-Seq batch analysis (≤20 samples) Per run 2,300 3,726 7,452 6,707
ChIP-Seq analysis Per sample 52 84 168 152
TF location and motif analysis Per project 416 672 1,344 1,216
Epigenetic: DNA methylation Methyl-Seq batch analysis (≤20 samples) Per run 2,300 3,726 7,452 6,707
Methyl-Seq mC calling Per sample 52 84 168 152
Methylation density and motif analysis Per project 416 672 1,344 1,216
Genome Prokaryotic genome annotation Per genome 26 42 84 76
Prokaryotic genome assembly Per genome 26 42 84 76
Prokaryotic transcriptome assembly Per genome 26 42 84 76
Population Population structure analysis Per project 2,080 3,360 6,720 6,080
Population genetics parameters Per project 2,080 3,360 6,720 6,080
Genome wide association analysis Per project 2,080 3,360 6,720 6,080
Custom Custom down-stream data analysis Per hour 52 84 168 152
Training Per hour 62 100 201 181