Library Preparation and Bioinformatics Analysis

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  • Genomic: whole genome DNA-Seq and microbial metagenomics sequencing.
  • Transcriptomic: strand-specific RNA-Seq and small RNA-Seq.
  • Epigenomic: whole genome methyl-Seq and ChIP-Seq.
  • Bioinformatic: gene expression profiling, genome/transcriptome assembly and annotation, SNP/SV detection, population genetics studies and metagenomics analysis.


Equipment Rates & Fees



ServiceUnitRPI UserExternal NonprofitExternal IndustryIndustrial Partners
Illumina RNA/DNA Library prepper sample$150$247$494$444
Nanopore RNA/DNA library preparationper sample$236$388$776$699
Bioanalyzerper chip$63$104$207$197
Qubitper sample$3.50$6$12$10
Gel Electrophoresisper gel$14$23$46$41
PCR-QCper sample$14$23$46$41


DATA files will not be stored beyond 6 months
CategoryServiceUnitRPI UserExternal NonprofitExternal IndustryExternal Industry Partner
Data QC and alignmentBarcode deconvolution, quality assessment and read clean-upper sample$20$33$66$60
Reference genome mappingper sample$31$51$102$92
RNA-SeqRNA-Seq batch analysis (≤20 samples)per run$1982$3260$6521$5869
Gene expression profilling per sampleper sample$31$51$102$92
Differential expression analysisper project$257$423$846$762
DNA-SeqProkaryotic DNA-Seq batch analysis (≤20 samples)per run$2230$3668$7337$6603
Eukaryotic DNA-Seq batch analysis (≤20 samples)per run$2849$4687$9373$8436
Prokaryotic genomic variant callingper sample$31$51$102$92
Eukaryotic genomic variant callingper sample$65$107$214$193
GBS variant callingper sample$31$51$102$92
Variant quality assessment and filteringper project$516$849$1698$1529
Small RNA-SeqSmall RNA-Seq batch analysis (≤20 samples)per run$1982$3260$6521$5869
Small RNA-Seq peak callingper sample$31$51$102$92
Differential expression analysisper project$257$423$846$762
Epigenetic: protein-DNA interactionChIP-Seq batch analysis (≤20 samples)per run$2849$4687$9373$8436
ChIP-Seq analysisper sample$65$107$214$193
TF location and motif analysisper project$516$849$1698$1529
GenomeProkaryotic genome annotationper genome$31$51$102$92
Prokaryotic genome assemblyper genome$31$51$102$92
Prokaryotic transcriptome assemblyper genome$31$51$102$92
PopulationPopulation structure analysisper project$2577$4240$8479$7632
Population genetics parametersper project$2577$4240$8479$7632
Genome wide association analysisper project$2577$4240$8479$7632
CustomCustom downstream analysisper hour$70$115$168$152
ServerServer monthly feeper account$183$302$603$543
 RPI UsersExternal NonprofitExternal IndustryExternal Industry Partners
Personnel Time$70$115$230$207

Valid through July 31, 2024. Rates are hourly unless specified otherwise and are subject to change without further notice.

Required Acknowledgement and Authorship

Please acknowledge the CBIS Core Facilities in all publications and grant applications where our equipment and/or personnel have facilitated the work. These acknowledgements are very important because documenting our contributions helps to ensure that the resources of the Core Facilities are sustainable.

  • Equipment: If you used Core Facility equipment, please note this in the Materials and Methods. e.g., Thermogravimetric analysis was carried out using a TA Instruments TGA-Q50 (Rensselaer CBIS Analytical Biochemistry Core Facility).
  • Personnel: Please consider including CBIS personnel as co-authors on your publications when they have made a significant intellectual contribution to the research. Include CBIS Core Facility directors or staff as co-PI or co-investigators in grant applications when they provide a significant contribution to the grant proposal and scientific/intellectual leadership for the proposed work. Please follow these guidelines: ABRF Recommended Guidelines for Authorship on Manuscripts. Also, our Core Facility personnel always appreciate when they are mentioned in the Acknowledgements section of publications.
  • Required Funding Authorization Form: Rensselaer researchers must fill out the CBIS Cores Authorization Form (PDF) to use the CBIS Core Facilities.
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